Yishai Shimoni 
contact information
Manager, Machine Learning for Healthcare and Life SciencesHaifa Research Lab, Haifa, Israel +972
37689554
37689554 links
more information
More information: Machine Learning for Healthcare and Life Sciences | Machine Learning Analytics | Haifa Research Labs (HRL)2021
Trends in clinical characteristics and associations of severe non-respiratory events related to SARS-CoV-2
Tal El-Hay, Ehud Karavani, Asaf Perez, Matan Ninio, Sivan Ravid, Michal Chorev, Michal Rosen-Zvi, Tal Patalon, Yishai Shimoni, Anil Jain
medRxiv, Cold Spring Harbor Laboratory Press, 2021
Tal El-Hay, Ehud Karavani, Asaf Perez, Matan Ninio, Sivan Ravid, Michal Chorev, Michal Rosen-Zvi, Tal Patalon, Yishai Shimoni, Anil Jain
medRxiv, Cold Spring Harbor Laboratory Press, 2021
2019
A discriminative approach for finding and characterizing positivity violations using decision trees
Ehud Karavani, Peter Bak, Yishai Shimoni
arXiv preprint arXiv:1907.08127, 2019
Ehud Karavani, Peter Bak, Yishai Shimoni
arXiv preprint arXiv:1907.08127, 2019
A discriminative approach for finding and characterizing positivity violations using decision trees
Ehud Karavani, Peter Bak, Yishai Shimoni
arXiv preprint arXiv:1907.08127, 2019
Ehud Karavani, Peter Bak, Yishai Shimoni
arXiv preprint arXiv:1907.08127, 2019
RW3 FRAMEWORK FOR RELIABLE VALUE ASSESSMENT OF TREATMENTS USING CAUSAL ANALYSIS OF OBSERVATIONAL DATA: SUPPORT MATCHING BIOLOGICAL THERAPY TO RHEUMATOID ARTHRITIS PATIENTS
Y Shimoni, S Ravid, P Bak, E Karavani, S Hensley Alford, D Meade, Y Goldschmidt
Value in Health22, S389, Elsevier, 2019
Y Shimoni, S Ravid, P Bak, E Karavani, S Hensley Alford, D Meade, Y Goldschmidt
Value in Health22, S389, Elsevier, 2019
An Evaluation Toolkit to Guide Model Selection and Cohort Definition in Causal Inference
Yishai Shimoni, Ehud Karavani, Sivan Ravid, Peter Bak, Tan Hung Ng, Sharon Hensley Alford, Denise Meade, Yaara Goldschmidt
arXiv preprint arXiv:1906.00442, 2019
Yishai Shimoni, Ehud Karavani, Sivan Ravid, Peter Bak, Tan Hung Ng, Sharon Hensley Alford, Denise Meade, Yaara Goldschmidt
arXiv preprint arXiv:1906.00442, 2019
Comment: Causal Inference Competitions: Where Should We Aim?
Ehud Karavani, Tal El-Hay, Yishai Shimoni, Chen Yanover, others
Statistical Science 34(1), 86--89, Institute of Mathematical Statistics, 2019
Ehud Karavani, Tal El-Hay, Yishai Shimoni, Chen Yanover, others
Statistical Science 34(1), 86--89, Institute of Mathematical Statistics, 2019
2018
Benchmarking framework for performance-evaluation of causal inference analysis
Yishai Shimoni, Chen Yanover, Ehud Karavani, Yaara Goldschmnidt
arXiv preprint arXiv:1802.05046, 2018
Yishai Shimoni, Chen Yanover, Ehud Karavani, Yaara Goldschmnidt
arXiv preprint arXiv:1802.05046, 2018
Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification
Yishai Shimoni
PLoS computational biology 14(2), e1006026, Public Library of Science, 2018
Yishai Shimoni
PLoS computational biology 14(2), e1006026, Public Library of Science, 2018
2015
Using DeMAND, a package for Interrogating Drug Mechanism of Action using Network Dysregulation analysis
Jung Hoon Woo, Yishai Shimoni, Mukesh Bansal, Andrea Califano
2015
Jung Hoon Woo, Yishai Shimoni, Mukesh Bansal, Andrea Califano
2015
Elucidating compound mechanism of action by network perturbation analysis
Jung Hoon Woo, Yishai Shimoni, Wan Seok Yang, Prem Subramaniam, Archana Iyer, Paola Nicoletti, María Rodríguez-Martínez, Gonzalo López, Michela Mattioli, Ronald Realubit, Charles Karan, Brent R. Stockwell, Mukesh Bansal and And
Cell 162(2), 441-451, 2015
Jung Hoon Woo, Yishai Shimoni, Wan Seok Yang, Prem Subramaniam, Archana Iyer, Paola Nicoletti, María Rodríguez-Martínez, Gonzalo López, Michela Mattioli, Ronald Realubit, Charles Karan, Brent R. Stockwell, Mukesh Bansal and And
Cell 162(2), 441-451, 2015
Stochastic analysis of bistability in coherent mixed feedback loops combining transcriptional and posttranscriptional regulations
Mor Nitzan, Yishai Shimoni, Oded Rosolio, Hanah Margalit, Ofer Biham
PHYSICAL REVIEW E 91(5), 052706, APS physics, 2015
Mor Nitzan, Yishai Shimoni, Oded Rosolio, Hanah Margalit, Ofer Biham
PHYSICAL REVIEW E 91(5), 052706, APS physics, 2015
2014
An atlas of active enhancers across human cell types and tissues
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki, others
Nature 507(7493), 455--461, Nature Publishing Group, 2014
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki, others
Nature 507(7493), 455--461, Nature Publishing Group, 2014
A promoter-level mammalian expression atlas
The FANTOM Consortium, others
Nature 507(7493), 462--470, Nature Publishing Group, 2014
The FANTOM Consortium, others
Nature 507(7493), 462--470, Nature Publishing Group, 2014
2013
Improving breast cancer survival analysis through competition-based multidimensional modeling
Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A Logsdon, Gaurav Pandey, Benjamin A Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H Mecham, others
2013
Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A Logsdon, Gaurav Pandey, Benjamin A Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H Mecham, others
2013
2011
Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation
Yishai Shimoni, German Nudelman, Fernand Hayot, Stuart C Sealfon
PloS one 6(12), Public Library of Science, 2011
Yishai Shimoni, German Nudelman, Fernand Hayot, Stuart C Sealfon
PloS one 6(12), Public Library of Science, 2011
Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells
Jianzhong Hu, German Nudelman, Yishai Shimoni, Madhu Kumar, Yaomei Ding, Carolina L\'opez, Fernand Hayot, James G Wetmur, Stuart C Sealfon
PLoS One 6(2), e16614, Public Library of Science, 2011
Jianzhong Hu, German Nudelman, Yishai Shimoni, Madhu Kumar, Yaomei Ding, Carolina L\'opez, Fernand Hayot, James G Wetmur, Stuart C Sealfon
PLoS One 6(2), e16614, Public Library of Science, 2011
2010
Plato's cave algorithm: inferring functional signaling networks from early gene expression shadows
Yishai Shimoni, Marc Y Fink, Soon-gang Choi, Stuart C Sealfon
2010
Yishai Shimoni, Marc Y Fink, Soon-gang Choi, Stuart C Sealfon
2010
Entanglement of periodic states, the quantum Fourier transform, and Shor’s factoring algorithm
Yonatan Most, Yishai Shimoni, Ofer Biham
Physical Review A 81(5), 052306, APS, 2010
Yonatan Most, Yishai Shimoni, Ofer Biham
Physical Review A 81(5), 052306, APS, 2010
2009
Stochastic analysis of the SOS response in Escherichia coli
Yishai Shimoni, Shoshy Altuvia, Hanah Margalit, Ofer Biham
PLoS One 4(5), e5363, Public Library of Science, 2009
Yishai Shimoni, Shoshy Altuvia, Hanah Margalit, Ofer Biham
PLoS One 4(5), e5363, Public Library of Science, 2009
2007
Groverian entanglement measure of pure quantum states with arbitrary partitions
Yishai Shimoni, Ofer Biham
Physical Review A 75(2), 022308, APS, 2007
Yishai Shimoni, Ofer Biham
Physical Review A 75(2), 022308, APS, 2007
Formation of multipartite entanglement using random quantum gates
Yonatan Most, Yishai Shimoni, Ofer Biham
Physical Review A 76(2), 022328, APS, 2007
Yonatan Most, Yishai Shimoni, Ofer Biham
Physical Review A 76(2), 022328, APS, 2007
Regulation of gene expression by small non-coding RNAs: a quantitative view
Yishai Shimoni, Gilgi Friedlander, Guy Hetzroni, Gali Niv, Shoshy Altuvia, Ofer Biham, Hanah Margalit
Molecular Systems Biology 3(1), 138, EMBO Press, 2007
Yishai Shimoni, Gilgi Friedlander, Guy Hetzroni, Gali Niv, Shoshy Altuvia, Ofer Biham, Hanah Margalit
Molecular Systems Biology 3(1), 138, EMBO Press, 2007
2006
Groverian measure of entanglement for mixed states
Daniel Shapira, Yishai Shimoni, Ofer Biham
Physical Review A 73(4), 044301, APS, 2006
Daniel Shapira, Yishai Shimoni, Ofer Biham
Physical Review A 73(4), 044301, APS, 2006
2005
Algebraic analysis of quantum search with pure and mixed states
Daniel Shapira, Yishai Shimoni, Ofer Biham
Physical Review A 71(4), 042320, APS, 2005
Daniel Shapira, Yishai Shimoni, Ofer Biham
Physical Review A 71(4), 042320, APS, 2005
Entangled quantum states generated by Shor’s factoring algorithm
Yishai Shimoni, Daniel Shapira, Ofer Biham
Physical Review A 72(6), 062308, APS, 2005
Yishai Shimoni, Daniel Shapira, Ofer Biham
Physical Review A 72(6), 062308, APS, 2005
2004
Characterization of pure quantum states of multiple qubits using the Groverian entanglement measure
Yishai Shimoni, Daniel Shapira, Ofer Biham
Physical Review A 69(6), 062303, APS, 2004
Yishai Shimoni, Daniel Shapira, Ofer Biham
Physical Review A 69(6), 062303, APS, 2004
2003
Characterization of Entanglement in Pure Quantum States
Yishai Shimoni
Hebrew University of Jerusalem, 2003
Yishai Shimoni
Hebrew University of Jerusalem, 2003
Analysis of Grover’s quantum search algorithm as a dynamical system
Ofer Biham, Daniel Shapira, Yishai Shimoni
Physical Review A 68(2), 022326, APS, 2003
Ofer Biham, Daniel Shapira, Yishai Shimoni
Physical Review A 68(2), 022326, APS, 2003
Year Unknown
Supporting information for the paper: Stochastic Analysis of the SOS Response in Escherichia coli
Yishai Shimoni, Shoshy Altuvia, Hanah Margalit, Ofer Biham
0
Yishai Shimoni, Shoshy Altuvia, Hanah Margalit, Ofer Biham
0
GWAS next generation: identifying mechanisms of action in association studies.
Mar\'\ia Rodr\'\iguez Mart\'\inez, Paola Nicoletti, Gonzalo L\'opez, Mukesh Bansal, Yishai Shimoni, Andrea Califano
Regulatory Genomics Special Interest Group (RegGen SIG) Program July 20, 2013
Mar\'\ia Rodr\'\iguez Mart\'\inez, Paola Nicoletti, Gonzalo L\'opez, Mukesh Bansal, Yishai Shimoni, Andrea Califano
Regulatory Genomics Special Interest Group (RegGen SIG) Program July 20, 2013