Query-driven Document-level Scientific Evidence Extraction from Biomedical StudiesMassimiliano PronestiJoao Bettencourt-Silvaet al.2025ACL 2025
Conceptual Diagnostics for Knowledge Graphs and Large Language ModelsRosario Uceda-SosaMaria Changet al.2025ACL 2025
Bringing Serverless Functions Closer To Citizen Science Mobile ApplicationsAleksander SlominskiPedro Garcia-lopezet al.2025ICDCS 2025
AutoPeptideML 2: An open source library for democratizing machine learning for peptide bioactivity predictionRaúl Fernández DíazLam Thanh Hoanget al.2025ISMB 2025
GENET: AI-Powered Interactive Visualization Workflows to Explore Biomedical Entity NetworksBc KwonNatasha Mulliganet al.2025ISMB 2025
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell AnalysesJoao Bettencourt-SilvaNatasha Mulliganet al.2025ISMB 2025
Harnessing biomedical foundation models for genomic feature engineering to investigate patient drug responseLaura GardinerStephen Checkleyet al.2025ISMB 2025
LEOPARD: Linking Experimental Observations with Predictive Algorithms to reveal Response Dynamics for the single cellVibha AnandAkira Kosekiet al.2025ISMB 2025
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision MedicineChing-Huei TsouMichal Ozery-Flatoet al.2025ISMB 2025
Optimal Transport on structured data for improved classification of host health from omics dataNandini GadhiaMichail Smyrnakiset al.2025ISMB 2025