Matthias Reumann  Matthias Reumann photo       

contact information

Sustainable, Resilient Health Systems Research
Zurich Research Laboratory, Zurich, Switzerland
  +41dash44dash724dash84dash12

links

Professional Associations

Professional Associations:  IEEE, Senior Member


2016

Marginalized Continuous Time Bayesian Networks for Network Reconstruction from Incomplete Observations
Lukas Studer, Loic Pauleve, Christoph Zechner, Matthias Reumann, Maria Rodriguez Martinez, Heinz Koeppl
AAAI Conference on Artificial Intelligence, 2016


2015

A platform for leveraging next generation sequencing for routine microbiology and public health use
Laura I Rusu, Kelly L Wyres, Matthias Reumann, Carlos Queiroz, Alexe Bojovschi, Tom Conway, Saurabh Garg, David J Edwards, Geoff Hogg, Kathryn E Holt
Health Information Science and Systems 3(1), 1, BioMed Central, 2015

High performance computing enabling exhaustive analysis of higher order single nucleotide polymorphism interaction in Genome Wide Association Studies
Benjamin Goudey, Mani Abedini, John L Hopper, Michael Inouye, Enes Makalic, Daniel F Schmidt, John Wagner, Zeyu Zhou, Justin Zobel, Matthias Reumann
Health Information Science and Systems1, 3, BioMed Central Ltd, 2015


2014

WGS analysis and interpretation in clinical and public health microbiology laboratories: what are the requirements and how do existing tools compare?
Kelly L Wyres, Thomas C Conway, Saurabh Garg, Carlos Queiroz, Matthias Reumann, Kathryn Holt, Laura I Rusu
Pathogens 3(2), 437-458, Multidisciplinary Digital Publishing Institute, 2014


2013

Spatio-temporal information and knowledge representation of disease incidence and respective intervention strategies
Matthew Davis, Stefan von Cavallar, Kelly L Wyres, Matthias Reumann, Martin J Sepulveda, Priscilla Rogers
Studies in Health Technology and Informatics205, 1173-1177, 2013

Genome assembly framework on massively parallel, distributed memory supercomputers
Friedrich Menhorn, Matthias Reumann
Biomedical Engineering/Biomedizinische Technik, 2013

Science at llnl with ibm blue gene/q
B. Carnes, B. Chan, E.W. Draeger, J.-L. Fattebert, L. Fried, J. Glosli, W.D. Krauss, S.H. Langer, R. McCallen, A.A. Mirin, F. Najjar, A.L. Nichols, T. Oppelstrup, J.A. Rathkopf, D. Richards, F. Streitz, P.M. Vranas, J.J. Rice, J.A. Gunnels, et al.
IBM Journal of Research and Development 57(1/2), 11:1-11:18, IBM, 2013

Towards real-time simulation of cardiac electrophysiology in a human heart at high resolution
D.F. Richards, J.N. Glosli, E.W. Draeger, A.A. Mirin, B. Chan, J.L. Fattebert, W.D. Krauss, T. Oppelstrup, C.J. Butler, J.A. Gunnels, V. Gurev, C. Kim, J. Magerlein, M. Reumann, H.-F. Wen, J.J. Rice
Computer Methods in Biomechanics and Biomedical Engineering 16(7), 802-805, 2013


2012


Supercomputing enabling exhaustive statistical analysis of genome wide association study data: Preliminary results
M. Reumann, E. Makalic, B.W. Goudey, M. Inouye, A. Bickerstaffe, M. Bui, D.J. Park, M.K. Kapuscinski, D.F. Schmidt, Z. Zhou, G. Qian, J. Zobel, J. Wagner, J.L. Hopper
IEEE 2012 annual international conference, Engineering in Medicine and Biology Socity (EMBC), pp. 1258-1261

In silico cardiac risk assessment in patients with long QT syndrome: type 1: clinical predictability of cardiac models
R. Hoefen, M. Reumann, I. Goldenberg, A.J. Moss, O. Jin, Y. Gu, S. McNitt, W. Zareba, C. Jons, J.K. Kanters, P.G. Platonov, W. Shimizu, A.A.M. Wilde, J.J. Rice, C.M. Lopes
Journal of the American College of Cardiology 60(21), 2182-2191, 2012

Toward real-time modeling of human heart ventricles at cellular resolution: simulation of drug-induced arrhythmias
A.A. Mirin, D.F. Richards, J.N. Glosli, E.W. Draeger, B. Chan, J.L. Fattebert, W.D. Krauss, T. Oppelstrup, J.J. Rice, J.A. Gunnels, V. Gurev, C. Kim, J. Magerlein, M. Reumann, H.F. Wen
Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis, pp. 2, 2012


2011

In Silico Cardiac Risk Assessment of Long QT Patients: Clinical Predictability of Cardiac Models
C.M. Lopes, R. Hoefen, M. Reumann, J. O-Uchi, A.J. Moss, C. Jons, S. McNitt, W. Zareba, J.J. Rice, I. Goldenberg
Circulation 124(21 Supplement), A12787, Am. Heart. Assoc., 2011

Orthogonal recursive bisection as data decomposition strategy for massively parallel cardiac simulations
Matthias Reumann, Blake G Fitch, Aleksander Rayshubskiy, Michael C Pitman, John J Rice
Biomedizinische Technik/Biomedical Engineering 56(3), 129-145, 2011

Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models
Bernard J Pope, Blake G Fitch, Michael C Pitman, John J Rice, Matthias Reumann
Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE, pp. 433--436

Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers
Philip C Church, Andrzej Goscinski, Kathryn Holt, Michael Inouye, Amol Ghoting, Konstantin Makarychev, Matthias Reumann
Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE, pp. 924--927

Use of mutant-specific ion channel characteristics for risk stratification of long QT syndrome patients
C. Jons, O. Jin, A.J. Moss, M. Reumann, J.J. Rice, I. Goldenberg, W. Zareba, A.A.M. Wilde, W. Shimizu, J.K. Kanters, S. McNitt, N. Hofman, J.L. Robinson and C.M.B. Lopes
Science Translational Medicine 3(76), AAAS, 2011

Performance of hybrid programming models for multiscale cardiac simulations: Preparing for petascale computation
Bernard J Pope, Blake G Fitch, Michael C Pitman, John Jeremy Rice, Matthias Reumann
Biomedical Engineering, IEEE Transactions on 58(10), 2965--2969, IEEE, 2011


2009



Strong scaling and speedup to 16,384 processors in cardiac electro-mechanical simulations
M. Reumann, B. G. Fitch, A. Rayshubskiy, D. U. Keller, G. Seemann, O. Dossel, M. C. Pitman, J. J. Rice
Conf Proc IEEE Eng Med Biol Soc2009, 2795--2798

Orthogonal recursive bisection data decomposition for high performance computing in cardiac model simulations: Dependence on anatomical geometry
Matthias Reumann, Blake G Fitch, Aleksandr Rayshubskiy, David UJ Keller, Gunnar Seemann, Olaf Doessel
IEEE Engineering in Medicine and Biology Society, pp. 2799-2802, 2009


2008

Preventive ablation strategies in a biophysical model of atrial fibrillation based on realistic anatomical data
Matthias Reumann, Julia Bohnert, Gunnar Seemann, Brigitte Osswald, Olaf Doessel
IEEE Transactions on Biomedical Engineering 55(2), 399-406, 2008

Large scale cardiac modeling on the Blue Gene supercomputer
Matthias Reumann, Blake G Fitch, Aleksandr Rayshubskiy, David U Keller, Daniel L Weiss, Gunnar Seemann, Olaf Dossel, Michael C Pitman, John J Rice
IEEE 30th Annual International Conference on Engineering in Medicine and Biology Society, pp. 577-580, 2008

Assessing learning progress and quality of teaching in large groups of students
Matthias Reumann, Matthias Mohr, Anke Diez, Olaf Doessel
IEEE 30th Annual International Conference of Engineering in Medicine and Biology Society, pp. 2877-2880, 2008


2007

Computer model for the optimization of AV and VV delay in cardiac resynchronization therapy
Matthias Reumann, Dima Farina, Raz Miri, Stephan Lurz, Brigitte Osswald, Olaf Doessel
Medical & Biological Engineering & Computing 45(9), 845-854, 2007


2006

Computer-assisted Planning of Cardiac Interventions and Heart Surgery
Olaf Doessel, Dima Farina, Matthias B Mohr, Matthias Reumann, Gunnar Seemann, Daniel L Weiss
GI Annual Conference, pp. 499-506, 2006