Ping Zhang  Ping Zhang photo       

contact information

Research Staff Member - Center for Computational Health
IBM T.J. Watson Research Center, Yorktown Heights, NY 10598, USA
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Professional Associations

Professional Associations:  ACM SIGKDD  |  American Medical Informatics Association  |  IEEE Computer Society  |  International Society for Computational Biology


2017

Large-Scale Structural and Textual Similarity-Based Mining of Knowledge Graph to Predict Drug-Drug Interactions
Ibrahim Abdelaziz, Achille Fokoue, Oktie Hassanzadeh, Ping Zhang, Mohammad Sadoghi
Journal of Web Semantics, 2017
Abstract

Exploiting Electronic Health Records to Mine Drug Effects on Laboratory Test Results
Mohamed Ghalwash, Ying Li, Ping Zhang, Jianying Hu
ACM International Conference on Information and Knowledge Management (CIKM), 2017

Polyadic Regression and its Application to Chemogenomics
Ioakeim Perros, Fei Wang, Ping Zhang, Peter Walker, Richard Vuduc, Jyotishman Pathak, Jimeng Sun
SIAM International Conference on Data Mining (SDM), 2017
Abstract

Computational Drug Discovery with Dyadic Positive-Unlabeled Learning
Yashu Liu, Shuang Qiu, Ping Zhang, Pinghua Gong, Fei Wang, Guoliang Xue, Jieping Ye
SIAM International Conference on Data Mining (SDM), 2017
Abstract

Identifying Chemical Substructures Associated with Adverse Drug Reactions using Deep Learning Framework
Sanjoy Dey, Heng Luo, Achille Fokoue-Nkoutche, Jianying Hu, Ping Zhang
Annual Meeting of the International Society of Pharmacovigilance (ISoP), Abstract, 2017

Multitask Dyadic Prediction and Its Application in Prediction of Adverse Drug-Drug Interaction
Bo Jin, Haoyu Yang, Cao Xiao, Ping Zhang, Xiaopeng Wei, Fei Wang
AAAI Conference on Artificial Intelligence (AAAI), 2017
Abstract

Adverse Drug Reaction Prediction with Symbolic Latent Dirichlet Allocation
Cao Xiao, Ping Zhang, W. Art Chaovalitwongse, Jianying Hu, Fei Wang
AAAI Conference on Artificial Intelligence (AAAI), 2017
Abstract

Precision Cohort Finding with Outcome-Driven Similarity Analytics: A Case Study of Patients with Atrial Fibrillation
Haifeng Liu, Xiang Li, Guotong Xie, Xin Du, Ping Zhang, Chengming Gu, Jingyi Hu
World Congress on Medical Health Informatics (Medinfo), 2017

DrugPathSeeker: Interactive UI for Exploring Drug-ADR Relation via Pathways
Janu Verma, Heng Luo, Jianying Hu, Ping Zhang
IEEE Pacific Visualization Symposium (PacificVis), 2017
Abstract

Integrating Temporal Pattern Mining in Ischemic Stroke Prediction and Treatment Pathway Discovery for Atrial Fibrillation
Shijing Guo, Xiang Li, Haifeng Liu, Ping Zhang, Xin Du, Guotong Xie, Fei Wang
AMIA Summit on Clinical Research Informatics (CRI), 2017
Abstract

Indication Prediction for Small Molecules with Pathway-based Visualization
Heng Luo, Janu Verma, Jianying Hu, Ping Zhang
AMIA Summit on Translational Bioinformatics (TBI), Poster, 2017

Improving Predictive Models with Clustered Sequences: An Application on Heart Failure Risk Prediction
Kun Lin, Ping Zhang, Gigi Yuen-Reed, Ying Li, Jianying Hu
AMIA Summit on Clinical Research Informatics (CRI), Abstract, 2017


2016

Towards Large-Scale Predictive Drug Safety: A Computational Framework for Inferring Drug Interactions Through Similarity-Based Link Prediction
Achille Fokoue-Nkoutche, Ping Zhang, Oktie Hassanzadeh, Mohammad Sadoghi
American Medical Informatics Association Annual Symposium (AMIA), Poster, 2016

Joint Modeling of Survival Events through Multi-task Learning Framework
Zhaonan Sun, Xu Liu, Ping Zhang, Jianying Hu, Juan Wisnivesky, Fei Wang
American Medical Informatics Association Annual Symposium (AMIA), Abstract, 2016

Tiresias: Knowledge Engineering and Large-Scale Machine Learning for Interpretable Drug-Drug Interaction Prediction
Achille Fokoue-Nkoutche, Oktie Hassanzadeh, Mohammad Sadoghi, Ping Zhang
American Medical Informatics Association Annual Symposium (AMIA), Demo, 2016

Data-Driven Prediction of Beneficial Drug Combinations in Spontaneous Reporting Systems
Ying Li, Ping Zhang, Zhaonan Sun, Jianying Hu
American Medical Informatics Association Annual Symposium (AMIA), 2016
Abstract

Integrated Machine Learning Approaches for Predicting Ischemic Stroke and Thromboembolism in Atrial Fibrillation
Xiang Li, Haifeng Liu, Xin Du, Ping Zhang, Gang Hu, Guotong Xie, Shijing Guo, Meilin Xu, Xiaoping Xie
American Medical Informatics Association Annual Symposium (AMIA), 2016
Abstract

Using Frequent Item Set Mining and Feature Selection Methods to Identify Interacted Risk Factors - The Atrial Fibrillation Case Study
Xiang Li, Haifeng Liu, Xin Du, Gang Hu, Guotong Xie, Ping Zhang
Medical Informatics Europe (MIE), 2016
Abstract

Imputing Drug-Perturbed Gene Expression Profiles for LINCS L1000 Data
Rachel Hodos, Ping Zhang, Qiaonan Duan, Avi Ma'ayan, Neil R. Clark, Fei Wang, David Sontag, Jianying Hu, Joel Dudley
AMIA Summit on Translational Bioinformatics (TBI), Abstract, 2016

Predicting Drug-Drug Interactions through Large-Scale Similarity-Based Link Prediction
Achille Fokoue-Nkoutche, Mohammad Sadoghi, Oktie Hassanzadeh, Ping Zhang
Extended Semantic Web Conference (ESWC), 2016
Abstract

DPDR-CPI, a server that predicts Drug Positioning and Drug Repositioning via Chemical-Protein Interactome
Heng Luo*, Ping Zhang*, Xi Hang Cao, Dizheng Du, Hao Ye, Hui Huang, Can Li, Shengying Qin, Chunling Wan, Leming Shi, Lin He, Lun Yang (*Co-First Author)
Scientific Reports, Nature Publishing Group, 2016
Abstract

Predicting Drug-Drug Interactions Through Similarity-Based Link Prediction Over Web Data
Achille Fokoue-Nkoutche, Oktie Hassanzadeh, Mohammad Sadoghi, Ping Zhang
International World Wide Web Conference (WWW), Demo Track, ACM, 2016

Risk Prediction with Electronic Health Records: A Deep Learning Approach
Yu Cheng, Fei Wang, Ping Zhang, Jianying Hu
SIAM International Conference on Data Mining (SDM), 2016
Abstract


2015

Towards Computational Drug Repositioning: A Comparative Study of Single-task and Multi-task Learning
Ping Zhang, Zhaonan Sun, Fei Wang, Jianying Hu
American Medical Informatics Association Annual Symposium (AMIA), Abstract, 2015
Abstract

Label Propagation Prediction of Drug-Drug Interactions Based on Clinical Side Effects
Ping Zhang, Fei Wang, Jianying Hu, Robert Sorrentino
Scientific Reports, Nature Publishing Group, 2015
Abstract

Precision Medicine on Cancer Treatment: A Joint Matrix Factorization Approach
Ping Zhang, Filippo Utro, Fei Wang, Jianying Hu
AIME Workshop on Matrix Computations for Biomedical Informatics (MCBI), 2015
Abstract

Curating and Integrating Data from Multiple Sources to Support Healthcare Analytics
Kenney Ng, Chris Kakkanatt, Michael Benigno, Clay Thompson, Margaret Jackson, Amos Cahan, Xinxin Zhu, Ping Zhang, Paul Huang
International Medical Informatics Conference (MedInfo), Abstract, IOS Press, 2015
Abstract

Prediction of Drug-Drug Interactions Based on Clinical Side Effects
Ping Zhang, Fei Wang, Jianying Hu
AMIA Summit on Translational Bioinformatics (TBI), Abstract, 2015

Personalized Medicine on Cancer Treatment: Using Big Data Techniques to Integrate Clinical and Genomic Data
Filippo Utro, Ping Zhang, Fei Wang, Jianying Hu
AMIA Summit on Translational Bioinformatics (TBI), Abstract, 2015


2014

Systematic Prediction of Drug Combinations Based on Clinical Side-Effects
Hui Huang*, Ping Zhang*, Xiaoyan A. Qu, Philippe Sanseau, Lun Yang (*Co-First Author)
Scientific Reports, Nature Publishing Group, 2014
Abstract

Clinical Risk Prediction by Exploring High-Order Feature Correlations
Fei Wang, Ping Zhang, Xiang Wang, Jianying Hu
American Medical Informatics Association Annual Symposium (AMIA), 2014
Abstract

Clinical Risk Prediction with Multilinear Sparse Logistic Regression
Fei Wang, Ping Zhang, Buyue Qian, Xiang Wang, Ian Davidson
ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), 2014
Abstract

Exploring the Associations Between Drug Side-effects and Therapeutic Indications
Fei Wang*, Ping Zhang*, Nan Cao, Jianying Hu, Robert Sorrentino (*Co-First Author)
Journal of Biomedical Informatics (JBI), 2014
Abstract

Towards Personalized Medicine: Leveraging Patient Similarity and Drug Similarity Analytics
Ping Zhang, Fei Wang, Jianying Hu, Robert Sorrentino
AMIA Summit on Translational Bioinformatics (TBI), 2014
Abstract

DDI-CPI, a server that predicts Drug-Drug Interactions through implementing the Chemical-Protein Interactome
Heng Luo*, Ping Zhang*, Hui Huang, Jialiang Huang, Emily Kao, Leming Shi, Lin He, Lun Yang (*Co-First Author)
Nucleic Acids Research (NAR), 2014
Abstract

Towards Drug Repositioning: A Unified Computational Framework for Integrating Multiple Aspects of Drug Similarity and Disease Similarity
Ping Zhang, Fei Wang, Jianying Hu
American Medical Informatics Association Annual Symposium (AMIA), 2014
Abstract


2013

Dydruma: A Dynamic Drug Map for Exploring the Associations Among Drug Therapeutic Indications and Side-Effects
Fei Wang, Ping Zhang, Nan Cao, Jianying Hu, Robert Sorrentino
AMIA Workshop on Visual Analytics in Healthcare (VAHC), 2013
Abstract

Computational Drug Repositioning by Ranking and Integrating Multiple Data Sources
Ping Zhang, Pankaj Agarwal, Zoran Obradovic
European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD), 2013
Abstract

Learning by Aggregating Experts and Filtering Novices: A Solution to Crowdsourcing Problems in Bioinformatics
Ping Zhang, Weidan Cao, Zoran Obradovic
BMC Bioinformatics14, 2013
Abstract

Exploring the Relationship Between Drug Side-Effects and Therapeutic Indications
Ping Zhang, Fei Wang, Jianying Hu, Robert Sorrentino
American Medical Informatics Association Annual Symposium (AMIA), 2013
Abstract

Predicting Changes in Hypertension Control using Electronic Health Records from a Chronic Disease Management Program
Jimeng Sun, Candace McNaughton, Ping Zhang, Adam Perer, Aris Gkoulalas-Divanis, Joshua Denny, Jacqueline Kirby, Thomas Lasko, Alexander Saip, Bradley Malin
Journal of the American Medical Informatics Association (JAMIA) 21(2), 337--344, BMJ Publishing Group Ltd, 2013
Abstract


2012

Semi-Supervised Learning on Single-View Datasets by Integration of Multiple Co-Trained Classifiers
Jelena Slivka*, Ping Zhang*, Aleksandar Kovacevic, Zora Konjovic, Zoran Obradovic (*Co-First Author)
International Conference on Machine Learning and Applications (ICMLA), 2012
Abstract

Integration of Multiple Annotators by Aggregating Experts and Filtering Novices
Ping Zhang, Zoran Obradovic
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2012
Abstract


2011

Learning from Inconsistent and Unreliable Annotators by a Gaussian Mixture Model and Bayesian Information Criteria
Ping Zhang, Zoran Obradovic
European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD), 2011
Abstract

Unsupervised Integration of Multiple Protein Disorder Predictors: The Method and Evaluation on CASP7, CASP8 and CASP9 Data
Ping Zhang, Zoran Obradovic
Proteome Science9, 2011
Abstract


2010

Unsupervised Integration of Multiple Protein Disorder Predictors
Ping Zhang, Zoran Obradovic
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2010