Pablo Meyer  Pablo Meyer photo       

contact information

Team Leader
Thomas J. Watson Research Center, Yorktown Heights, NY USA



Predicting human olfactory perception from chemical features of odor molecules
Keller, Andreas and Gerkin, Richard C and Guan, Yuanfang and Dhurandhar, Amit and Turu, Gabor and Szalai, Bence and Mainland, Joel D and Ihara, Yusuke and Yu, Chung Wen and Wolfinger, Russ and others
Science, eaal2014, American Association for the Advancement of Science, 2017


Crowdsourcing biomedical research: leveraging communities as innovation engines
Saez-Rodriguez, Julio and Costello, James C and Friend, Stephen H and Kellen, Michael R and Mangravite, Lara and Meyer, Pablo and Norman, Thea and Stolovitzky, Gustavo
Nature Reviews Genetics 17(8), 470--486, Nature Publishing Group, 2016


Enzyme function is regulated by its localization.
Gifford SM, Meyer P.
Computational Biology and Chemistry, 2015

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.
Karr JR, Williams AH, Zucker JD, Raue A, Steiert B, Timmer J, Kreutz C; DREAM8 Parameter Estimation Challenge Consortium, Wilkinson S, Allgood BA, Bot BM, Hoff BR, Kellen MR, Covert MW, Stolovitzky GA, Meyer P.
Plos Comp Bio, 2015

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge
A. Dayarian, R. Romero, Z. Wang, M. Biehl, E. Bilal, S. Hormoz, P. Meyer, R. Norel, K. Rhrissorrakrai, G. Bhanot, F. Luo, A. L. Tarca
Bioinformatics 31(4), 462--470, 2015

A crowd-sourcing approach for the construction of species-specific cell signaling networks
E. Bilal, T. Sakellaropoulos, I. N. Melas, D. E. Messinis, V. Belcastro, K. Rhrissorrakrai, P. Meyer, R. Norel, A. Iskandar, E. Blaese, J. J. Rice, M. C. Peitsch, J. Hoeng, G. Stolovitzky, L. G. Alexopoulos, C. Poussin
Bioinformatics 31(4), 484--491, 2015

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge
M. Biehl, P. Sadowski, G. Bhanot, E. Bilal, A. Dayarian, P. Meyer, R. Norel, K. Rhrissorrakrai, M. D. Zeller, S. Hormoz
Bioinformatics 31(4), 453--461, 2015

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge
K. Rhrissorrakrai, V. Belcastro, E. Bilal, R. Norel, C. Poussin, C. Mathis, R. H. Dulize, N. V. Ivanov, L. Alexopoulos, J. J. Rice, M. C. Peitsch, G. Stolovitzky, P. Meyer, J. Hoeng
Bioinformatics 31(4), 471--483, 2015


Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach
Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, others
BMC systems biology 8(1), 13, BioMed Central Ltd, 2014

Localization of aggregating proteins in bacteria depends on the rate of addition
Karlton Scheu, Rakinder Gill, Saeed Saberi, Pablo Meyer, Eldon Emberly
Frontiers in microbiology5, Frontiers Media SA, 2014

Inter-species Inference of Gene Set Enrichment in Lung Epithelial Cells from Proteomic and Large Transcriptomic Data Sets
Sahand Hormoz, Gyan Bhanot, Michael Biehl, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Adel Dayarian
Bioinformatics, btu569, Oxford Univ Press, 2014

The species translation challenge—a systems biology perspective on human and rat bronchial epithelial cells
Carine Poussin, Carole Mathis, Leonidas G Alexopoulos, Dimitris E Messinis, R\'emi HJ Dulize, Vincenzo Belcastro, Ioannis N Melas, Theodore Sakellaropoulos, Kahn Rhrissorrakrai, Erhan Bilal, others
Scientific Data1, Nature Publishing Group, 2014


sbv IMPROVER Diagnostic Signature Challenge: Design and results
Kahn Rhrissorrakrai, J Jeremy Rice, Stephanie Boue, Marja Talikka, Erhan Bilal, Florian Martin, Pablo Meyer, Raquel Norel, Yang Xiang, Gustavo Stolovitzky, others
Systems Biomedicine 1(4), 3--14, Landes Bioscience, 2013

sbv IMPROVER Diagnostic Signature Challenge: Scoring strategies
Raquel Norel, Erhan Bilal, Nathalie Conrad-Chemineau, Richard Bonneau, Alberto de la Fuente, Igor Jurisica, Daniel Marbach, Pablo Meyer, J Jeremy Rice, Tamir Tuller, others
Systems Biomedicine 1(4), 15--23, Landes Bioscience, 2013

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.
Tarca AL, Lauria M, Unger M, Bilal E, Boue S, Kumar Dey K, Hoeng J, Koeppl H, Martin F, Meyer P, Nandy P, Norel R, Peitsch M, Rice JJ, Romero R, Stolovitzky G, Talikka M, Xiang Y, Zechner C; IMPROVER DSC Collaborators.
Bioinformatics 29(22), 2892, 2013

Critical assessment of automated flow cytometry data analysis techniques.
Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.
Nature Methods10(3), 228, 2013

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.
Meyer P, Siwo G, Zeevi D, Sharon E, Norel R; DREAM6 Promoter Prediction Consortium, Segal E, Stolovitzky G.
Genome Research11, 1928-37, Cold Sprinh Harbor Press, 2013


Industrial methodology for process verification in research (IMPROVER): toward systems biology verification
P. Meyer, J. Hoeng, J. J. Rice, R. Norel, J. Sprengel, K. Stolle, T. Bonk, S. Corthesy, A. Royyuru, M. C. Peitsch, G. Stolovitzky
Bioinformatics 28(9), 1193--1201, 2012


Verification of systems biology research in the age of collaborative competition
P. Meyer, L. G. Alexopoulos, T. Bonk, A. Califano, C. R. Cho, A. de la Fuente, D. de Graaf, A. J. Hartemink, J. Hoeng, N. V. Ivanov, H. Koeppl, R. Linding, D. Marbach, R. Norel, M. C. Peitsch, J. J. Rice, A. Royyuru, F. Schacherer, J. Sprengel, K. Stolle,
Nat. Biotechnol. 29(9), 811--815, 2011

A Key Temporal Delay in the Circadian Cycle of Drosophila is Mediated by a Nuclear Localization Signal in the TIM Protein
L Saez, M Derasmo, P Meyer, J Stiegliz, M W Young
Genetics, genetics--111, Genetics Soc America, 2011


Interactions between late-acting proteins required for peptidoglycan synthesis during sporulation
A Fay, P Meyer, J Dworkin
Journal of molecular biology 399(4), 547--561, Elsevier, 2010

Cell wall synthesis is necessary for membrane dynamics during sporulation of Bacillus subtilis
P Meyer, J Gutierrez, K Pogliano, J Dworkin
Molecular microbiology 76(4), 956--970, Wiley Online Library, 2010


A per/tim/dbt interval timer for drosophila’s circadian clock
L Saez, P Meyer, MW Young
Clocks and rhythms72, 69, CSHL Press, 2007

The 2006 Pittendrigh/Aschoff Lecture: New roles for old proteins in the Drosophila circadian clock
P Meyer, M W Young
Journal of Biological Rhythms 22(4), 283, Sage Publications, 2007

Applications of fluorescence microscopy to single bacterial cells
P Meyer, J Dworkin
Research in microbiology 158(3), 187--194, Elsevier, 2007


PER-TIM interactions in living Drosophila cells: an interval timer for the circadian clock
P Meyer, L Saez, M W Young
Science 311(5758), 226, American Association for the Advancement of Science, 2006


The respective contributions of the mother and daughter centrioles to centrosome activity and behavior in vertebrate cells
M Piel, P Meyer, A Khodjakov, C L Rieder, M Bornens
The Journal of Cell Biology 149(2), 317, Rockefeller Univ Press, 2000